anyone with genomewide microarray analysis experience ?

[Jochen Schulz]

trias:
> 
>  One of the things I would like to do is to fetch all data from a certain
> distance from gene ATGs say 100+/- bp and calculate the bp average over all
> genes over this region. 

I know absolutely nothing about your problem domain, but if your
distance function is metric, you can use this:

http://well-adjusted.de/mspace.py

or that:

http://code.activestate.com/recipes/572156/

The latter (by Baerophile) is fast, the former (by me) has more
features. Baerophile has even faster implementations (non-Python) as
well.

J.
-- 
I am worried that my dreams pale in comparison beside TV docu-soaps.
[Agree]   [Disagree]
                 <http://www.slowlydownward.com/NODATA/data_enter2.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: signature.asc
Type: application/pgp-signature
Size: 204 bytes
Desc: Digital signature
URL: <http://mail.python.org/pipermail/python-list/attachments/20090814/6dea115e/attachment-0001.sig>