new user needs help!

[Steve Holden]

drjekil (or should that be mrhyde?):

Once again, *please* make sure you reply to the list. Personal replies 
are much less likely to get attention.

regards
  Steve

drjekil sayer wrote:
> u got it!
> thats what i am trying to explain with my bad english!
> thanks once again.
> 
> 
> On 4/9/08, *Steve Holden* <steve at holdenweb.com 
> <mailto:steve at holdenweb.com>> wrote:
> 
>     drjekil77 at gmail.com <mailto:drjekil77 at gmail.com> wrote:
> 
>         thanks!
> 
> 
>     Please keep all replies on the list: somebody else may also wish to
>     help (and they will also pick up mistakes I make ;-)
> 
>         I am working with a text filelooks like this:
>         #NAME AA TOPO ACCESS DSSP STRIDE Z-COORD
>         1lghB A i 79.8 H H -24.58
>         1lghB V i 79.6 H H -22.06
>         1lghB H i 71.9 H H -19.94
>         i need to compare those lines which has a value between 10 to 22
>         and presents in the following way
>         True/false A C D E F G H I K L M N P Q R S T V X Y W(here
>         alfabets represents amino acids)
>         1 1:1 2:0 3:0 and so on for rest of the amino acids.
> 
> 
>         I have given 2 examples below to make it clear a bit:
> 
>         ex.1:
>         #NAME AA TOPO ACCESS DSSP STRIDE Z-COORD
>         1lghB A i 79.8 H H                              -24.58          
>                             #for that line amino acid is A and z-COORED
>         value is more than 22,so output should be look like
> 
>         True/false A C D E F G H I K L M N P Q R S T V X Y W(here
>         alfabets represents amino acids)
>         -1 1:1 2:0 3:o 4:0 so on upto 20 bcz there r 20 amino acids.and
>         A presents in the 1st position.every line represents one amino
>         acid with value,so output will show in which position is it(here
>         A is in 1st position thats why its value 1:1 and all the other
>         position o like 2:0,3:0,4:0 and if its Z-COORED value between
>         10-22 then true false value 1,otherwise -1.
> 
>         another ex:
> 
>         1lghB H i 71.9 H H -19.94            # for that line amino acid
>         is H and it has value between 10-22.so output should looks like:
> 
>         True/false A C D E F G H I K L M N P Q R S T V X Y W(here
>         alfabets represents 20 amino acids)
> 
>         1 1:0 2:0 3:0 4:0 5:0 6:0 7:1 8:0,every position is zero up to
>         20 bcz H presents in the 7th position.so  it will be 1.
> 
>         so for every line, output will in 21 coulum,1st coulum for true
>         false value,others r for 20 amino acids.true false value will be
>         either 1 or -1,and  within  other 20 coulum one value will be
>         n:1,others will be n:0.n=0,1,2,3..20.
>         its a bit tricky.
>         thank u so much for ur help
>         waiting for ur opinion.
>          
> 
>     So, you are using -1 for true and 1 for false? Can there be multiple
>     amino acids on each line?
> 
>     Would this be a possible input:
> 
>     1lghB AHG i 87.3 Q Q   -23.45
> 
>     If so, would this be the required output?
> 
>     -1 1:1 2:0 3:0 4:0 5:0 6:0 7:1 8:1 9:0 10:0 ... 19:0 20:0
> 
>     There is no point trying to write more code until we understand the
>     requirements properly.
> 
>     regards
>      Steve
>     -- 
>     Steve Holden        +1 571 484 6266   +1 800 494 3119
>     Holden Web LLC              http://www.holdenweb.com/
> 
> 


-- 
Steve Holden        +1 571 484 6266   +1 800 494 3119
Holden Web LLC              http://www.holdenweb.com/