recombination variations

Hung Jung Lu hungjunglu at yahoo.com
Wed Dec 1 22:37:54 EST 2004


alphabet = {
	'A': 'A',
	'T': 'T',
	'C': 'C',
	'G': 'G',
     	'W': 'AT',
	'M': 'AC',
	'R': 'AG',
     	'Y': 'TC',
	'K': 'TG',
	'S': 'CG',
     	'H': 'ATC',
	'D': 'ATG',
	'V': 'AGC',
	'B': 'CTG',
     	'N': 'ATCG'
	}

expand = lambda t: reduce(lambda r, s: [x+y for x in r for y in
alphabet[s]], t, [''])

print expand('ATSGS')

--------------

['ATCGC', 'ATCGG', 'ATGGC', 'ATGGG']



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