[Numpy-discussion] atlas not found, why?
T J
tjhnson at gmail.com
Mon Nov 3 13:46:37 EST 2008
Numpy doesn't seem to be finding my atlas install. Have I done
something wrong or misunderstood?
$ cd /usr/lib
$ ls libatlas*
libatlas.a libatlas.so libatlas.so.3gf libatlas.so.3gf.0
$ ls libf77*
libf77blas.a libf77blas.so libf77blas.so.3gf libf77blas.so.3gf.0
$ ls libcblas*
libcblas.a libcblas.so libcblas.so.3gf libcblas.so.3gf.0
$ ls liblapack*
liblapack-3.a liblapack.a liblapack_atlas.so
liblapack_atlas.so.3gf.0 liblapackgf-3.so liblapack.so.3gf
liblapack-3.so liblapack_atlas.a liblapack_atlas.so.3gf
liblapackgf-3.a liblapack.so liblapack.so.3gf.0
Since these are all in the standard locations, I am building without a
site.cfg. Here is the beginning info:
Running from numpy source directory.
non-existing path in 'numpy/distutils': 'site.cfg'
F2PY Version 2_5972
blas_opt_info:
blas_mkl_info:
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /usr/lib
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
NOT AVAILABLE
atlas_blas_info:
NOT AVAILABLE
/tmp/numpy/numpy/distutils/system_info.py:1340: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
warnings.warn(AtlasNotFoundError.__doc__)
blas_info:
libraries blas not found in /usr/local/lib
FOUND:
libraries = ['blas']
library_dirs = ['/usr/lib']
language = f77
FOUND:
libraries = ['blas']
library_dirs = ['/usr/lib']
define_macros = [('NO_ATLAS_INFO', 1)]
language = f77
lapack_opt_info:
lapack_mkl_info:
mkl_info:
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /usr/lib
NOT AVAILABLE
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
numpy.distutils.system_info.atlas_threads_info
NOT AVAILABLE
atlas_info:
numpy.distutils.system_info.atlas_info
NOT AVAILABLE
/tmp/numpy/numpy/distutils/system_info.py:1247: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
warnings.warn(AtlasNotFoundError.__doc__)
lapack_info:
libraries lapack not found in /usr/local/lib
FOUND:
libraries = ['lapack']
library_dirs = ['/usr/lib']
language = f77
FOUND:
libraries = ['lapack', 'blas']
library_dirs = ['/usr/lib']
define_macros = [('NO_ATLAS_INFO', 1)]
language = f77
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