[Neuroimaging] [ANN] MNE 1.3 Release
Bertrand Thirion
bertrand.thirion at inria.fr
Fri Jan 6 12:14:53 EST 2023
Congrats ! B
Le 06/01/2023 à 18:12, Alexandre Gramfort a écrit :
>
> Hello everyone,
>
>
> Just before xmas we released MNE-Python 1.3! 🎉 🎁 🎅
>
> Please find a detailed list of changes and contributors below.
>
> Congrts
>
> All the best,
>
>
> Your MNE Team.
>
>
>
> A few highlights
>
> ============
>
>
> *
>
> Mixed, cortical + discrete source spaces with fixed orientations
> are now allowed. (#11241
> <https://github.com/mne-tools/mne-python/issues/11241>by Jevri
> Hanna <https://github.com/jshanna100>)
>
> *
>
> Add support for image_format='webp'to mne.Report
> <https://mne.tools/stable/generated/mne.Report.html#mne.Report>when
> using Matplotlib 3.6+, which can reduce file sizes by up to 50%
> compared to 'png'. The new default image_format='auto'will
> automatically use this format if it’s available on the system
> (#11359 <https://github.com/mne-tools/mne-python/issues/11359>by
> Eric Larson <http://larsoner.com/>)
>
> *
>
> Add mne.beamformer.apply_dics_tfr_epochs()
> <https://mne.tools/stable/generated/mne.beamformer.apply_dics_tfr_epochs.html#mne.beamformer.apply_dics_tfr_epochs>to
> apply a DICS beamformer to time-frequency resolved epochs (#11096
> <https://github.com/mne-tools/mne-python/issues/11096>by Alex
> Rockhill <https://github.com/alexrockhill/>)
>
> *
>
> Check whether head radius (estimated from channel positions) is
> correct when reading EEGLAB data with read_raw_eeglab()
> <https://mne.tools/stable/generated/mne.io.read_raw_eeglab.html#mne.io.read_raw_eeglab>and
> read_epochs_eeglab()
> <https://mne.tools/stable/generated/mne.read_epochs_eeglab.html#mne.read_epochs_eeglab>.
> If head radius is not within likely values, warn informing about
> possible units mismatch and the new montage_unitsargument (#11283
> <https://github.com/mne-tools/mne-python/issues/11283>by Mikołaj
> Magnuski <https://github.com/mmagnuski>).
>
> *
>
> Add support for a callable passed in combinefor
> mne.time_frequency.AverageTFR.plot
> <https://mne.tools/stable/generated/mne.time_frequency.AverageTFR.html#mne.time_frequency.AverageTFR.plot>and
> mne.time_frequency.AverageTFR.plot_joint
> <https://mne.tools/stable/generated/mne.time_frequency.AverageTFR.html#mne.time_frequency.AverageTFR.plot_joint>(#11329
> <https://github.com/mne-tools/mne-python/issues/11329>by Mathieu
> Scheltienne <https://github.com/mscheltienne>)
>
>
>
> Notable API changes
>
> ================
>
>
> We have changed a few things that will require you to adjust your code.
>
>
> *
>
> In mne.time_frequency.dpss_windows()
> <https://mne.tools/stable/generated/mne.time_frequency.dpss_windows.html#mne.time_frequency.dpss_windows>,
> interpolating is deprecated (nowadays SciPy’s computations are
> fast enough for large Nwithout interpolation). This affects
> parameters interp_fromand interp_kind. Two new parameters of the
> underlying SciPy dpss()
> <https://scipy.github.io/devdocs/reference/generated/scipy.signal.windows.dpss.html#scipy.signal.windows.dpss>function
> are also exposed: sym(for choosing symmetric vs. periodic windows)
> and norm(window normalization method). (#11293
> <https://github.com/mne-tools/mne-python/issues/11293>by Daniel
> McCloy <http://dan.mccloy.info/>)
>
> *
>
> In mne.decoding.CSP.plot_patterns()
> <https://mne.tools/stable/generated/mne.decoding.CSP.html#mne.decoding.CSP.plot_patterns>,
> mne.decoding.CSP.plot_filters()
> <https://mne.tools/stable/generated/mne.decoding.CSP.html#mne.decoding.CSP.plot_filters>,
> mne.preprocessing.ICA.plot_components()
> <https://mne.tools/stable/generated/mne.preprocessing.ICA.html#mne.preprocessing.ICA.plot_components>,
> and mne.viz.plot_ica_components()
> <https://mne.tools/stable/generated/mne.viz.plot_ica_components.html#mne.viz.plot_ica_components>,
> the parameters vminand vmaxare deprecated in favor of vlim, for
> consistency with other topomap-plotting functions and methods
> (#11371 <https://github.com/mne-tools/mne-python/issues/11371>by
> Daniel McCloy <http://dan.mccloy.info/>)
>
> *
>
> In mne.decoding.CSP.plot_patterns()
> <https://mne.tools/stable/generated/mne.decoding.CSP.html#mne.decoding.CSP.plot_patterns>and
> mne.decoding.CSP.plot_filters()
> <https://mne.tools/stable/generated/mne.decoding.CSP.html#mne.decoding.CSP.plot_filters>the
> titleparameter is deprecated and will be removed in version 1.4
> (#11371 <https://github.com/mne-tools/mne-python/issues/11371>by
> Daniel McCloy <http://dan.mccloy.info/>)
>
> *
>
> The APIs of mne.preprocessing.ICA.plot_components()
> <https://mne.tools/stable/generated/mne.preprocessing.ICA.html#mne.preprocessing.ICA.plot_components>and
> mne.viz.plot_ica_components()
> <https://mne.tools/stable/generated/mne.viz.plot_ica_components.html#mne.viz.plot_ica_components>gained
> new parameters show_names, extrapolate, border, size, cnorm,
> cbar_fmt, axes, nrows, ncols, for consistency with other
> topomap-plotting functions and methods (#11371
> <https://github.com/mne-tools/mne-python/issues/11371>by Daniel
> McCloy <http://dan.mccloy.info/>)
>
> *
>
> The APIs of mne.decoding.CSP.plot_patterns()
> <https://mne.tools/stable/generated/mne.decoding.CSP.html#mne.decoding.CSP.plot_patterns>and
> mne.decoding.CSP.plot_filters()
> <https://mne.tools/stable/generated/mne.decoding.CSP.html#mne.decoding.CSP.plot_filters>gained
> new parameters extrapolate, border, cnorm, axes, nrows, ncols, for
> consistency with other topomap-plotting functions and methods
> (#11371 <https://github.com/mne-tools/mne-python/issues/11371>by
> Daniel McCloy <http://dan.mccloy.info/>)
>
>
>
> Full list of API changes:
>
> https://mne.tools/stable/whats_new.html#api-changes
> <https://mne.tools/stable/whats_new.html#api-changes>
>
>
>
> Full changelog
>
> ===========
>
>
> For a full list of improvements and API changes, see:
>
> https://mne.tools/stable/whats_new.html
> <https://mne.tools/stable/whats_new.html>
>
>
> Find the full documentation at https://mne.tools/
> <https://mne.tools/stable/index.html>
>
>
> Installing the new release
>
> ===================
>
>
> Since quite a few things – including dependencies – have changed, we
> recommend creating a new environment with a “fresh” installation.
> Please follow the installation instructions on our website:
>
> https://mne.tools/stable/install/mne_python.html
> <https://mne.tools/stable/install/mne_python.html>
>
>
> Feedback
>
> ========
>
>
> As usual, we welcome your bug reports, feature requests, critiques,
> and contributions. Development takes place on GitHub. If you would
> like to contribute, star ⭐ the project, or just take a peek at the
> code, visit https://github.com/mne-tools/mne-python
> <https://github.com/mne-tools/mne-python>.
>
>
> You may follow us on Twitterhttps://twitter.com/mne_news
> <https://twitter.com/mne_news>and on mastodon
> https://fosstodon.org/@mne <https://fosstodon.org/@mne>
>
>
> We hope you will enjoy the new features and many, many small
> improvements we have added, and are looking forward to receiving your
> feedback.
>
>
> The MNE-Python developers
>
>
>
> Contributors
>
> ==========
>
>
> MNE-Python is a community-driven project. We are always very happy to
> welcome new contributors of code and documentation! 29 people
> contributed to this release – and 13 were first-timers! Thank you all
> so very much for your time and effort, we truly appreciate it!
>
>
> Release contributors (+ are first time contributors):
>
>
> *
>
> Alex Rockhill
>
> *
>
> Alexandre Gramfort
>
> *
>
> Britta Westner
>
> *
>
> Carlos de la Torre+
>
> *
>
> Daniel Hasegan+
>
> *
>
> Daniel McCloy
>
> *
>
> Dinara Issagaliyeva+
>
> *
>
> Enzo Altamiranda+
>
> *
>
> Eric Brayet+
>
> *
>
> Eric Larson
>
> *
>
> Erkka Heinila
>
> *
>
> Felix Klotzsche
>
> *
>
> Hakimeh Aslsardroud+
>
> *
>
> Jennifer Behnke+
>
> *
>
> Jevri Hanna
>
> *
>
> Lukas Hecker
>
> *
>
> Mark Alexander Henney+
>
> *
>
> Mathieu Scheltienne
>
> *
>
> Mauricio Cespedes+
>
> *
>
> Mikołaj Magnuski
>
> *
>
> Moritz Gerster
>
> *
>
> Omer Shubi+
>
> *
>
> Pavel Navratil+
>
> *
>
> Richard Höchenberger
>
> *
>
> Santeri Ruuskanen+
>
> *
>
> Stefan Appelhoff
>
> *
>
> Timon Merk
>
> *
>
> Tom Ma+
>
> *
>
> Toomas Erik Anijärv+
>
>
>
>
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org
> https://mail.python.org/mailman/listinfo/neuroimaging
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://mail.python.org/pipermail/neuroimaging/attachments/20230106/03c57e43/attachment.html>
More information about the Neuroimaging
mailing list