[Neuroimaging] ANN: NiBabel 3.2

[JB Poline]

Indeed, thanks a lot !

On Tue, Oct 20, 2020 at 12:30 PM bthirion <bertrand.thirion at inria.fr> wrote:

> Thx Chris !
> B
>
> On 20/10/2020 15:55, Christopher Markiewicz wrote:
>
> Hi all,
>
> NiBabel 3.2 is released today. Python 3.6+ and Numpy 1.14+ are supported
> in this version. Please cite this version with doi:10.5281/zenodo.4109791 (
> https://doi.org/10.5281/zenodo.4109791).
>
> This release includes two new commandline utilities: nib-roi and
> nib-stats. nib-roi allows cropping and flipping images using Python slicing
> syntax. nib-stats, and the Python API nibabel.imagestats, is inspired by
> fslstats, and is intended to provide common calculations on images.
>
> Much thanks to new contributors Jonathan Daniel, Markéta Calábková, Carl
> Gauthier and Julian Klug, as well as familiar faces who have reported bugs,
> submitted PRs and especially reviewed contributions.
>
> The next planned minor release series will be 4.0, which will see some
> deprecations and removals, so please pay attention to any warnings that may
> be popping up. Judging from this last round, we can probably expect a
> release candidate around February or March.
>
> The full changelog follows.
>
> Best,
> Chris
>
> Most work on NiBabel so far has been by Matthew Brett (MB), Chris
> Markiewicz (CM), Michael Hanke (MH), Marc-Alexandre Côté (MC), Ben
> Cipollini (BC), Paul McCarthy (PM), Chris Cheng (CC), Yaroslav Halchenko
> (YOH), Satra Ghosh (SG), Eric Larson (EL), Demian Wassermann, Stephan
> Gerhard and Ross Markello (RM).
>
> References like "pr/298" refer to github pull request numbers.
>
> 3.2.0 (Tuesday 20 October 2020)
> ==============================
>
> New feature release in the 3.2.x series.
>
> New features
> ------------
> * ``nib-stats`` CLI tool to expose new ``nibabel.imagestats`` API. Initial
> implementation of volume calculations, a la ``fslstats -V``. (pr/952)
> (Julian Klug, reviewed by CM and GitHub user 0rC0)
> * ``nib-roi`` CLI tool to crop images and/or flip axes (pr/947) (CM,
> reviewed by Chris Cheng and Mathias Goncalves)
> * Parser for Siemens "ASCCONV" text format (pr/896) (Brendan Moloney and
> MB, reviewed by CM)
>
> Enhancements
> ------------
> * Drop confusing mention of ``img.to_filename()`` in getting started guide
> (pr/946) (Fernando Pérez-Garcia, reviewed by MB, CM)
> * Implement ``to_bytes()``/``from_bytes()`` methods for ``Cifti2Image``
> (pr/938) (CM, reviewed by Mathias Goncalves)
> * Clean up of DICOM documentation (pr/910) (Jonathan Daniel, reviewed by
> MB)
>
> Bug fixes
> ---------
> * Use canvas manager API to set title in ``OrthoSlicer3D`` (pr/958) (EL,
> reviewed by CM)
> * Record units as seconds parrec2nii; previously set TR to seconds but
> retained msec units (pr/931) (CM, reviewed by MB)
> * Reflect on-disk dimensions in NIfTI-2 view of CIFTI-2 images (pr/930)
> (Mathias Goncalves and CM)
> * Fix outdated Python 2 and Sympy code in DICOM derivations (pr/911) (MB,
> reviewed by CM)
> * Change string with invalid escape to raw string (pr/909) (EL, reviewed
> by MB)
>
> Maintenance
> -----------
> * Fix typo in docs (pr/955) (Carl Gauthier, reviewed by CM)
> * Purge nose from nisext tests (pr/934) (Markéta Calábková, reviewed by CM)
> * Suppress expected warnings in tests (pr/949) (CM, reviewed by Dorota
> Jarecka)
> * Various cleanups and modernizations (pr/916, pr/917, pr/918, pr/919)
> (Jonathan Daniel, reviewed by CM)
> * SVG logo for improved appearance in with zooming (pr/914) (Jonathan
> Daniel, reviewed by CM)
>
> API changes and deprecations
> ----------------------------
> * Drop support for Numpy < 1.13 (pr/922) (CM)
> * Warn on use of ``onetime.setattr_on_read``, which has been a deprecated
> alias of ``auto_attr`` (pr/948) (CM, reviewed by Ariel Rokem)
>
> --
>
> Chris Markiewicz
>
> Center for Reproducible Neuroscience
>
> Stanford University
>
>
> _______________________________________________
> Neuroimaging mailing listNeuroimaging at python.orghttps://mail.python.org/mailman/listinfo/neuroimaging
>
>
> _______________________________________________
> Neuroimaging mailing list
> Neuroimaging at python.org
> https://mail.python.org/mailman/listinfo/neuroimaging
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://mail.python.org/pipermail/neuroimaging/attachments/20201020/c70c1437/attachment.html>