[Neuroimaging] nibabel apply affine and resample
valabregue
romain.valabregue at upmc.fr
Thu Aug 17 11:06:50 EDT 2017
Dear all
1)
Sorry for the basic question (this may be just a python question ...)
How do I change the affine associate to the image
img = nibabel.load('file')
img.affine = newaffine #this give the error can't set attribute
# so I need to do
img.affine[:] = newaffine[:]
is it the correct way to change the affine ?
For what I need this work (: apply coregistration and reslice)
2)
Second question about the resample_from_to
this take a non negligeable time to compute since it is for the all
volume. If I only need 3 slices, is there a way to gain time by
reslicing only the request silces ?
Many thanks
Romain
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